Getting started

  • Installation
  • Purpose and contents

User guide

  • Using the user guide
  • HoloViews defaults
  • Bootstrap utilities
  • Stan (MCMC) utilities
  • Image processing utilities
  • API Reference

Credits and citation

  • Credits
  • Citing bebi103
bebi103
  • bebi103 repo on GitHub
  • View page source

bebi103: Utilities for Caltech BE/Bi 103 ab courses

The bebi103 package provides convenience functions for use in the BE/Bi 103 ab courses at Caltech.

Getting started

  • Installation
  • Purpose and contents

User guide

  • Using the user guide
    • Sample data
  • HoloViews defaults
    • Plots with HoloViews defaults
    • Plots with bebi103 defaults
    • Caution setting defaults
  • Bootstrap utilities
    • Random number generation
    • Nonparametric resampling methods
    • Parametric methods
  • Stan (MCMC) utilities
    • Model and sample data
    • A first pass through a simple workflow
    • Simulation-based calibration (SBC)
    • Using stanfunctions
    • Cleaning up
  • Image processing utilities
  • API Reference
    • HoloViews defaults
    • Visualization
    • Bootstrap methods
    • Stan utilities
    • Gaussian process utilities
    • Image processing utilities

Credits and citation

  • Credits
  • Citing bebi103
Next

Last updated on Jan 03, 2025.

© 2021 Justin Bois.

This document was prepared at Caltech with financial support from the Donna and Benjamin M. Rosen Bioengineering Center.


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