API Reference

HoloViews defaults

set_defaults	Set convenient HoloViews defaults
no_xgrid_hook	Hook for disabling x-grid lines.
no_ygrid_hook	Hook for disabling x-grid lines.

Visualization

confints	Make a horizontal plot of centers/conf ints with error bars.
fill_between	Create a filled region between two curves.
qqplot	Generate a Q-Q plot.
contour	Make a contour plot, possibly overlaid on an image.
predictive_ecdf	Plot a predictive ECDF from samples.
predictive_regression	Plot a predictive regression plot from samples.
sbc_rank_ecdf	Make a rank ECDF plot from simulation-based calibration.
parcoord	Make a parallel coordinate plot of MCMC samples.
trace	Make a trace plot of MCMC samples.
corner	Make a corner plot of sampling results.
contour_lines_from_samples	Get lines for a contour plot from (x, y) samples.
cdf_to_staircase	Convert discrete values of CDF to staircase for plotting.
q_to_color	Convert a quantitative value to a color.

Bootstrap methods

seed_rng	Seed random number generators for Numpy and Numba'd functions.
draw_bs_reps	Generate bootstrap replicates out of data using func.
draw_bs_reps_pairs	Perform pairs bootstrap for single statistic.
draw_bs_reps_mle	Draw bootstrap replicates of maximum likelihood estimator.
draw_perm_reps	Generate permutation replicates of func from data_1 and data_2
diff_of_means	Difference in means of two arrays.
studentized_diff_of_means	Studentized difference in means of two arrays.
pearson_r	Compute the Pearson correlation coefficient between two samples.

Stan utilities

clean_cmdstan	Remove all .hpp, .o, .d, and executable files resulting from compilation of Stan models using CmdStanPy.
cmdstan_version	Determine CmdStan version
df_to_datadict_hier	Convert a tidy data frame to a data dictionary for a hierarchical Stan model.
arviz_to_dataframe	Convert ArviZ InferenceData to a Pandas data frame.
check_divergences	Check transitions that ended with a divergence.
check_treedepth	Check transitions that ended prematurely due to maximum tree depth limit.
check_energy	Checks the energy-Bayes fraction of missing information (E-BFMI)
check_ess	Checks the effective sample size (ESS).
check_rhat	Checks the potential issues with scale reduction factors.
check_all_diagnostics	Checks all MCMC diagnostics
parse_warning_code	Parses warning code from check_all_diagnostics() into individual failures and prints results.
sbc	Perform simulation-based calibration on a Stan Model.
disable_logging	Context manager for disabling logging when doing MCMC sampling.

Gaussian process utilities

append_sort_index	Add the entries of X to Xstar, sort the result, and find indices in the results where the entries in X appear.
linear_kernel	Linear kernel.
polynomial_kernel	Polynomial kernel: (sigma_0^2 + sigma_p^2 x1 .
se_kernel	Squared exponential kernel.
d1_se_kernel	Derivative of first variable of squared exponential kernel.
d2_se_kernel	Derivative of second variable of squared exponential kernel.
d1_d2_se_kernel	Mixed second derivative of squared exponential kernel.
matern_kernel	Matern kernel.
periodic_kernel	Periodic kernel.
cov_exp_quad	Return covariance matrix for squared exponential kernel.
cov_d1_exp_quad	Return covariance matrix for squared exponential kernel differentiated by the first variable.
cov_d1_d2_exp_quad	Return covariance matrix for squared exponential kernel differentiated once by the first variable and once by the second.
cov_matern	Return covariance matrix for a Matérn kernel.
cov_periodic	Return covariance matrix for a perdioic kernel.
cov_from_kernel	Return covariance matrix for specified kernel.
posterior_mean_cov	Compute the posterior mean vector and covariance matrix for a posterior Gaussian process derived from a Normal likelihood and Gaussian process prior.

Image processing utilities

imshow	Display an image in a Bokeh figure.
record_clicks	Display and record mouse clicks on a Bokeh plot of an image.
draw_rois	Draw and record polygonal regions of interest on a plot of a Bokeh image.
roicds_to_df	Convert a ColumnDataSource outputted by draw_rois() to a Pandas DataFrame.
im_merge	Merge channels to make RGB image.
rgb_to_rgba32	Convert an RGB image to a 32 bit-encoded RGBA image.
rgb_frac_to_hex	Convert fractional RGB values to hexidecimal color string.
simple_image_collection	Load a collection of images.
verts_to_roi	Converts list of vertices to an ROI and ROI bounding box
costes_coloc	Perform Costes colocalization analysis on a pair of images.